SLEAP is an open source deep-learning based framework for multi-animal pose tracking.
How to install
mkdir -p ~/miniconda3
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O ~/miniconda3/miniconda.sh
bash ~/miniconda3/miniconda.sh -b -u -p ~/miniconda3
~/miniconda3/bin/conda init bash
Log out and log in to reload shell environment
conda create -y -n sleap -c sleap -c nvidia -c conda-forge sleap=1.3.3
How to run
Login https://apps.hpc.ntnu.no to start Desktop on a compute node. Example:
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Open terminal and run these commands:
conda activate sleap
sleap-label
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